National Universities
| Graduate Courses | Location (prefecture) |
| Hokkaido University (N) | Graduate school of Engineering | Hokkaido |
| Akita University (N) | Engineering and Resource Science | Akita |
| Tohoku University (N) | Graduate school of Engineering Graduate school of Science | Miyagi |
| University of Tsukuba (N) | Graduate School of Business Sciences | Ibaraki |
| Gunma University (N) | Graduate school of Engineering | Gunma |
| Saitama University (N) | Graduate school of Sience and Engineering | Saitama |
| The University of Tokyo(N) | Graduate School of Medicine Graduate School of Engineering Agricultural and Life Sciences Graduate School of Frontier Sciences | Tokyo |
| Tokyo University of Foreign Studies(N) | Graduate School of Global Studies | Tokyo |
| Tokyo Medical and Dental University (N) | Advanced Oral Health Science Course Graduate school of Public Health Leader Course Biomedical Science PhD Program | Tokyo |
| Tokyo University of Agriculture and Technology | United Graduate School of Agriculture Science Graduate School of Agriculture | Tokyo |
| Tokyo Institute of Technology | International Graduate Course | Tokyo |
| Tokyo University of Marine Science and Technology (N) | Marine Science and Technology | Tokyo |
| Hitotsubashi University | Graduate School of International Corporate Strategy School of International and Public Policy | Tokyo |
| Yokohama National University | Graduate School of Engineering International Graduate School of Social Sciences | Kanagawa |
| The Graduate University for Advanced Studies[SOKENDAI] | School of Physical Science High Energy Accelerator Science Multidisciplinary Science School of Life Science | Kanagawa |
| Niigata University | Medical Dental Sciences Modem Society and Culture | Niigata |
| Nagaoka University of Technology | Graduate School of Engineering | Niigata |
| Kanazawa University | Graduate School of Natural Science and Technology Graduate School of Medical Science | Ishikawa |
| Japan Advanced Institute of Science and Technology | School of Information Science School of Materials Science School of Knowledge Science | Ishikawa |
| University of Fukui | Graduate School of Engineering Doctoral Program | Fukui |
| Gifu University | United Graduate School of Agriculture Science | Gifu |
| Shizuoka University | Graduate School of Science and Technolgy,Educational Division | Shizuoka |
| Toyohashi University of Technology | Engineering | Aichi |
| Nagoya University | Graduate School of Law & Political Science (October entry) Graduate School of Engineering Graduate School of Enviromental Studies Graduate School of International Development Medicine | Aichi |
| Kyoto University | Energy Science Informatics: International Training Program for young ICT researchers Engineering: International Doctoral Program in Engineering Engineering: International Doctoral Program in Engineering for Sustainability | Kyoto |
| Kyoto Institute of Technology | Graduate School of Science and Technology | Kyoto |
| Osaka University | Graduate School of Engineering Engineering Science Language and Culture (Studies in Language and Society) | Osaka |
| Kobe University | Educational Program for bringing up Asia Leaders in Medical Research and Treatment Leadership Development Program for Maritime Sciences in Asia Special Master's and Doctoral Course in English -Study for Science of Food Safety- | Hyogo |
| Tottori University | Graduate School of Agriculture United Graduate School of Agriculture | Tottori |
| Shimane University | Graduate School of Science and Engineering Graduate School of Life and Environmental Science | Shimane |
| Okayama University | Graduate School of Natural Science and Technology Environmental Science Medicine, Dentistry and Pharmaceutical Sciences | Okayama |
| Hiroshima University | International Development and Cooperation Graduate School of Engineering Graduate School of Education | Hiroshima |
| Yamaguchi University | Graduate School of Agriculture (Bioresources Science) | Yamaguchi |
| Kagawa University | Graduate School of Agriculture | Kagawa |
| The University of Tokushima | Graduate School of Medical Sciences Graduate School of Nutrition and Biosciences Graduate School of Pharmaceutical Sciences Graduate School of Oral Sciences | Tokushima |
| Ehime University | The Graduate School of Agriculture The Graduate School of Agricultural Science | Ehime |
| Kochi University | Special Program for Foreign Postgraduate Students in Agriculture in Asia, Africa and Pan-Pacific Region | Kochi |
| Kyushu University | L.L.M Program in International Economics and Business Law L.L.D Program in International Economics and Business Law International Special Course on Environmental Systems Engineering Graduate School of Bioresource and Bioenvironmental Science Division of Dental Science Young Leaders' Program (Law) Comparative Studies of Politics and Administration in Asia | Fukuoka |
| Nagasaki University | Biomedical Sciences | Nagasaki |
| Saga University | Environmental Earth Sciences and Technology(PSJP) Graduate School of Science and Engineering Graduate School of Agricultural Science | Saga |
| Kumamoto University | Graduate School of Science and Technology Graduate School of Medical Sciences | Kumamoto |
| Kagoshima University | Fisheries | Kagoshima |
| University of The Ryukyus | Engineering and Science | Okinawa |
| National Graduate Institute for Policy Studies | Policy Studies International Development Studies | Tokyo |
Local Government Universities | Graduate Courses | Location (prefecture) |
| Akita International University | Global Business Graduate School of Global Communication and Language Graduate School of English Language Teaching Practices Graduate School of Japanese Language Teaching Practices Graduate School of Global Communication Practice | Akita |
| The University of Aizu | Graduate School of Computer Science and Engineering | Fukushima |
| The University of Kitakyushu | Social System Studies | Fukuoka |
| Private Universities | Graduate Courses | Location (prefecture) |
| Tokyo International University | Graduate School of Economics | Saitama |
| Tokyo Christian University | College of Theology(Bachelor) | Chiba |
| International Christian University | College of Liberal Arts(Bachelor) Education, Public Administration, Comparative Culture, Natural Sciences | Tokyo |
| Keio University | International Graduate Program on Advanced Science and Technology | Tokyo |
| Juntendo University | Medicine | Tokyo |
| Sophia University | Graduate School of Global Studies Graduate School of Foreign Studies Faculty of Liberal Arts (Bachelor) | Tokyo |
| Takushoku University | Graduate School of International Cooperation Studies | Tokyo |
| Waseda University | Graduate School of Information and Telecommunication Studies Graduate School of Asia-Pacific Studies Graduate School of Information, Production and System Graduate of Commerce School of International Liberal Studies | Tokyo |
| International University of Japan (IUJ) | Graduate School of International Relations Graduate School of International Management | Nigata |
| Niigata Institute of Technology | Graduate of Technology School of Engineering | Nigata |
| Nagoya University of Commerce and Business | Graduate School of Business Administration Graduate School of Global Business Communication | Aichi |
| Kwansei Gakuin University | Graduate School of Institute of Business and Accounting Graduate School of Science and Technology | Hyogo |
| Ritsumeikan University | International Relations Economics: MPED (Master's Prog. in Econ. Dev.) Science and Engineering | Kyoto |
| Miyazaki International College | International Liberal Arts: Comparative Culture(Bachelor) | Miyazaki |
| Kochi University of Technology | Graduate School of Engineering /Doctoral Program Course for International Students | Kochi |
| Ritsumeikan Asia Pacific University | College of Asia-Pacific Studies (Bachelor)
College of Asia Pasific Management (Bachelor)
Graduate School of Asia-Pacific Studies
Graduate School of Management
| Oita |